trxtools package
================

trxtools.sam module
--------------------------

trxtools.sam.SAMgeneral submodule
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. automodule:: trxtools.sam.SAMgeneral
   :members:
   :undoc-members:
   :show-inheritance:

trxtools.sam.SAMgenome submodule
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. automodule:: trxtools.sam.SAMgenome
   :members:
   :undoc-members:
   :show-inheritance:

trxtools.sam.SAMtranscripts submodule
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. automodule:: trxtools.sam.SAMtranscripts
   :members:
   :undoc-members:
   :show-inheritance:

trxtools.BigWig module
----------------------

.. automodule:: trxtools.BigWig
   :members:
   :undoc-members:
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trxtools.metaprofiles module
----------------------------

.. automodule:: trxtools.metaprofiles
   :members:
   :undoc-members:
   :show-inheritance:

trxtools.assays module
----------------------

.. automodule:: trxtools.assays
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   :undoc-members:
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trxtools.go_enrichment module
-----------------------------

.. automodule:: trxtools.go_enrichment
   :members:
   :undoc-members:
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trxtools.methods module
-----------------------

.. automodule:: trxtools.methods
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   :undoc-members:
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trxtools.nascent module
-----------------------

.. automodule:: trxtools.nascent
   :members:
   :undoc-members:
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trxtools.plotting module
------------------------

.. automodule:: trxtools.plotting
   :members:
   :undoc-members:
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trxtools.profiles module
------------------------

.. automodule:: trxtools.profiles
   :members:
   :undoc-members:
   :show-inheritance:

trxtools.secondary module
-------------------------

.. automodule:: trxtools.secondary
   :members:
   :undoc-members:
   :show-inheritance: